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Feature/indexing tweaks

Jonathan Fisher requested to merge feature/indexing-tweaks into develop

This merge request contains 3 basic changes

  • The nstacks parameter of FFT indexing can be changed by user in the peak auto-indexing dialog. This improved the situation for some Biodiff data, because it appears to be necessary to tweak this parameter occasionally.
  • When interating through the list of solutions, we take care not to throw away the possible solutions in which the basis vectors are in a left-handed orientation. Instead, we just flip the vectors so that the configuration becomes right-handed.
  • Various minor changes to code formatting to improve readability, as well as a few additional explicit casts to remove compiler warnings.

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