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cleanup API regarding direct and reciprocal vectors

Important set of refactoring which consists in cleaning up the current API from Eigen::Vector3d and Eigen::RowVector3d by DirectVector and ReciprocalVector. Given the sensible part of the code affected could you double-check and modify if needed ? This refactoring also introduced some copy. Could you check on your side that the performance is not affected ?

Edited by eric pellegrini

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