The code.ill.fr has been recreated and upgraded with the latest version this weekend, If you encounter any problem please inform the Helpdesk.

Commit e6522414 authored by Eric Pellegrini's avatar Eric Pellegrini
Browse files

Merge branch 'develop' of https://code.ill.fr/scientific-software/mdanse into develop

parents 22c5c3a6 377f0bb2
Pipeline #7059 passed with stages
in 15 minutes and 56 seconds
stages:
- docker_login
- docker_pre_clean
- ci
- deploy
- docker_logout
- docker_post_clean
docker_login:
stage: docker_login
docker_pre_clean:
stage: docker_pre_clean
script:
- docker login -u gitlab-ci-token -p ${CI_JOB_TOKEN} ${CI_REGISTRY}
- ${CI_PROJECT_DIR}/BuildServer/Docker/clean.sh
allow_failure: true
tags:
- docker
- sci
- ubuntu
docker_post_clean:
stage: docker_post_clean
script:
- ${CI_PROJECT_DIR}/BuildServer/Docker/clean.sh
allow_failure: true
when: always
tags:
- docker
- sci
- ubuntu
############################
# ubuntu trusty pipeline
# ubuntu trusty pipeline
############################
ci:ubuntu_trusty:
stage: ci
script:
- docker build --force-rm --build-arg MDANSE_GIT_COMMIT=${CI_COMMIT_SHA} -t ci_mdanse_trusty -f ${CI_PROJECT_DIR}/BuildServer/Docker/Builder/Ubuntu-trusty/Dockerfile_build .
- docker build --force-rm=true -t ci_mdanse_trusty -f ${CI_PROJECT_DIR}/BuildServer/Docker/Ubuntu-trusty/Dockerfile_setup .
- docker build --force-rm=true --build-arg CI_COMMIT_SHORT_SHA=${CI_COMMIT_SHORT_SHA} --build-arg CI_COMMIT_REF_NAME=${CI_COMMIT_REF_NAME} --no-cache -t ci_mdanse_trusty_build -f ${CI_PROJECT_DIR}/BuildServer/Docker/Ubuntu-trusty/Dockerfile_build .
- docker run -iv${PWD}:/artifacts/ ci_mdanse_trusty_build
allow_failure: false
artifacts:
paths:
- ${CI_PROJECT_DIR}/build
- ${CI_PROJECT_DIR}/temp
expire_in: 1 hrs
tags:
- docker
- sci
......@@ -29,9 +48,9 @@ ci:ubuntu_trusty:
deploy:ubuntu_trusty:
stage: deploy
script:
- docker build --force-rm -t deploy_mdanse_trusty -f ${CI_PROJECT_DIR}/BuildServer/Docker/Builder/Ubuntu-trusty/Dockerfile_deploy .
- chmod 755 ${CI_PROJECT_DIR}/BuildServer/Docker/upload_artefacts.sh
- ${CI_PROJECT_DIR}/BuildServer/Docker/upload_artefacts.sh trusty
- docker build --force-rm=true -t ci_mdanse_trusty -f ${CI_PROJECT_DIR}/BuildServer/Docker/Ubuntu-trusty/Dockerfile_setup .
- docker build --force-rm=true --build-arg CI_COMMIT_SHORT_SHA=${CI_COMMIT_SHORT_SHA} --build-arg CI_COMMIT_REF_NAME=${CI_COMMIT_REF_NAME} --no-cache -t ci_mdanse_trusty_build -f ${CI_PROJECT_DIR}/BuildServer/Docker/Ubuntu-trusty/Dockerfile_deploy .
- docker run -iv${PWD}:/artifacts/ ci_mdanse_trusty_build
dependencies:
- ci:ubuntu_trusty
allow_failure: false
......@@ -46,20 +65,27 @@ deploy:ubuntu_trusty:
when: on_success
artifacts:
paths:
- ./*.deb
- ${CI_PROJECT_DIR}/*.deb
tags:
- docker
- sci
- ubuntu
############################
# ubuntu xenial pipeline
# ubuntu xenial pipeline
############################
ci:ubuntu_xenial:
stage: ci
script:
- docker build --force-rm --build-arg MDANSE_GIT_COMMIT=${CI_COMMIT_SHA} -t ci_mdanse_xenial -f ${CI_PROJECT_DIR}/BuildServer/Docker/Builder/Ubuntu-xenial/Dockerfile_build .
- docker build --force-rm=true -t ci_mdanse_xenial -f ${CI_PROJECT_DIR}/BuildServer/Docker/Ubuntu-xenial/Dockerfile_setup .
- docker build --force-rm=true --build-arg CI_COMMIT_SHORT_SHA=${CI_COMMIT_SHORT_SHA} --build-arg CI_COMMIT_REF_NAME=${CI_COMMIT_REF_NAME} --no-cache -t ci_mdanse_xenial_build -f ${CI_PROJECT_DIR}/BuildServer/Docker/Ubuntu-xenial/Dockerfile_build .
- docker run -iv${PWD}:/artifacts/ ci_mdanse_xenial_build
allow_failure: false
artifacts:
paths:
- ${CI_PROJECT_DIR}/build
- ${CI_PROJECT_DIR}/temp
expire_in: 1 hrs
tags:
- docker
- sci
......@@ -68,9 +94,9 @@ ci:ubuntu_xenial:
deploy:ubuntu_xenial:
stage: deploy
script:
- docker build --force-rm -t deploy_mdanse_xenial -f ${CI_PROJECT_DIR}/BuildServer/Docker/Builder/Ubuntu-xenial/Dockerfile_deploy .
- chmod 755 ${CI_PROJECT_DIR}/BuildServer/Docker/upload_artefacts.sh
- ${CI_PROJECT_DIR}/BuildServer/Docker/upload_artefacts.sh xenial
- docker build --force-rm=true -t ci_mdanse_xenial -f ${CI_PROJECT_DIR}/BuildServer/Docker/Ubuntu-xenial/Dockerfile_setup .
- docker build --force-rm=true --build-arg CI_COMMIT_SHORT_SHA=${CI_COMMIT_SHORT_SHA} --build-arg CI_COMMIT_REF_NAME=${CI_COMMIT_REF_NAME} --no-cache -t ci_mdanse_xenial_build -f ${CI_PROJECT_DIR}/BuildServer/Docker/Ubuntu-xenial/Dockerfile_deploy .
- docker run -iv${PWD}:/artifacts/ ci_mdanse_xenial_build
dependencies:
- ci:ubuntu_xenial
allow_failure: false
......@@ -85,7 +111,7 @@ deploy:ubuntu_xenial:
when: on_success
artifacts:
paths:
- ./*.deb
- ${CI_PROJECT_DIR}/*.deb
tags:
- docker
- sci
......@@ -97,8 +123,15 @@ deploy:ubuntu_xenial:
ci:ubuntu_bionic:
stage: ci
script:
- docker build --force-rm --build-arg MDANSE_GIT_COMMIT=${CI_COMMIT_SHA} -t ci_mdanse_bionic -f ${CI_PROJECT_DIR}/BuildServer/Docker/Builder/Ubuntu-bionic/Dockerfile_build .
- docker build --force-rm=true -t ci_mdanse_bionic -f ${CI_PROJECT_DIR}/BuildServer/Docker/Ubuntu-bionic/Dockerfile_setup .
- docker build --force-rm=true --build-arg CI_COMMIT_SHORT_SHA=${CI_COMMIT_SHORT_SHA} --build-arg CI_COMMIT_REF_NAME=${CI_COMMIT_REF_NAME} --build-arg CI_COMMIT_SHORT_SHA=${CI_COMMIT_SHORT_SHA} --build-arg CI_COMMIT_REF_NAME=${CI_COMMIT_REF_NAME} --no-cache -t ci_mdanse_bionic_build -f ${CI_PROJECT_DIR}/BuildServer/Docker/Ubuntu-bionic/Dockerfile_build .
- docker run -iv${PWD}:/artifacts/ ci_mdanse_bionic_build
allow_failure: false
artifacts:
paths:
- ${CI_PROJECT_DIR}/build
- ${CI_PROJECT_DIR}/temp
expire_in: 1 hrs
tags:
- docker
- sci
......@@ -107,9 +140,9 @@ ci:ubuntu_bionic:
deploy:ubuntu_bionic:
stage: deploy
script:
- docker build --force-rm -t deploy_mdanse_bionic -f ${CI_PROJECT_DIR}/BuildServer/Docker/Builder/Ubuntu-bionic/Dockerfile_deploy .
- chmod 755 ${CI_PROJECT_DIR}/BuildServer/Docker/upload_artefacts.sh
- ${CI_PROJECT_DIR}/BuildServer/Docker/upload_artefacts.sh bionic
- docker build --force-rm=true -t ci_mdanse_bionic -f ${CI_PROJECT_DIR}/BuildServer/Docker/Ubuntu-bionic/Dockerfile_setup .
- docker build --force-rm=true --build-arg CI_COMMIT_SHORT_SHA=${CI_COMMIT_SHORT_SHA} --build-arg CI_COMMIT_REF_NAME=${CI_COMMIT_REF_NAME} --no-cache -t ci_mdanse_bionic_build -f ${CI_PROJECT_DIR}/BuildServer/Docker/Ubuntu-bionic/Dockerfile_deploy .
- docker run -iv${PWD}:/artifacts/ ci_mdanse_bionic_build
dependencies:
- ci:ubuntu_bionic
allow_failure: false
......@@ -221,14 +254,3 @@ deploy:windows:
tags:
- sci
- windows-10
docker_logout:
stage: docker_logout
when: always
script:
- docker logout
tags:
- docker
- sci
- ubuntu
FROM docker.ill.fr/scientific-software/mdanse:ubuntu-bionic
SHELL ["/bin/bash", "-c"]
ARG MDANSE_GIT_COMMIT
RUN GIT_SSL_NO_VERIFY=true git clone https://code.ill.fr/scientific-software/mdanse.git
WORKDIR mdanse
RUN git checkout ${MDANSE_GIT_COMMIT}
RUN source ./BuildServer/Unix/Debian/definitions.sh; source ./BuildServer/Unix/setup_ci.sh ; ./BuildServer/Unix/build.sh
RUN source ./BuildServer/Unix/Debian/definitions.sh; source ./BuildServer/Unix/setup_ci.sh ; ./BuildServer/Unix/tests.sh
FROM ci_mdanse_bionic
SHELL ["/bin/bash", "-c"]
VOLUME builds
RUN source ./BuildServer/Unix/Debian/definitions.sh; source ./BuildServer/Unix/setup_ci.sh ; source ./BuildServer/Unix/bionic_dependencies_modification.sh ; ./BuildServer/Unix/Debian/deploy.sh
FROM docker.ill.fr/scientific-software/mdanse:ubuntu-trusty
SHELL ["/bin/bash", "-c"]
ARG MDANSE_GIT_COMMIT
RUN GIT_SSL_NO_VERIFY=true git clone https://code.ill.fr/scientific-software/mdanse.git
WORKDIR mdanse
RUN git checkout ${MDANSE_GIT_COMMIT}
RUN source ./BuildServer/Unix/Debian/definitions.sh; source ./BuildServer/Unix/setup_ci.sh ; ./BuildServer/Unix/build.sh
RUN source ./BuildServer/Unix/Debian/definitions.sh; source ./BuildServer/Unix/setup_ci.sh ; ./BuildServer/Unix/tests.sh
FROM ci_mdanse_trusty
SHELL ["/bin/bash", "-c"]
VOLUME builds
RUN source ./BuildServer/Unix/Debian/definitions.sh; source ./BuildServer/Unix/setup_ci.sh ; ./BuildServer/Unix/Debian/deploy.sh
FROM docker.ill.fr/scientific-software/mdanse:ubuntu-xenial
SHELL ["/bin/bash", "-c"]
ARG MDANSE_GIT_COMMIT
RUN GIT_SSL_NO_VERIFY=true git clone https://code.ill.fr/scientific-software/mdanse.git
WORKDIR mdanse
RUN git checkout ${MDANSE_GIT_COMMIT}
RUN source ./BuildServer/Unix/Debian/definitions.sh; source ./BuildServer/Unix/setup_ci.sh ; ./BuildServer/Unix/build.sh
RUN source ./BuildServer/Unix/Debian/definitions.sh; source ./BuildServer/Unix/setup_ci.sh ; ./BuildServer/Unix/tests.sh
FROM ci_mdanse_xenial
SHELL ["/bin/bash", "-c"]
VOLUME builds
RUN source ./BuildServer/Unix/Debian/definitions.sh; source ./BuildServer/Unix/setup_ci.sh ; ./BuildServer/Unix/Debian/deploy.sh
#!/bin/bash
docker build --force-rm -t docker.ill.fr/scientific-software/mdanse:$1 -f $2/Dockerfile .
FROM ci_mdanse_bionic
SHELL ["/bin/bash", "-c"]
ARG CI_COMMIT_SHORT_SHA
ARG CI_COMMIT_REF_NAME
ENV CI_COMMIT_SHORT_SHA=${CI_COMMIT_SHORT_SHA}
ENV CI_COMMIT_REF_NAME=${CI_COMMIT_REF_NAME}
COPY ./ /app/
WORKDIR /app
CMD source ./BuildServer/Unix/Debian/definitions.sh; source ./BuildServer/Unix/setup_ci.sh; ./BuildServer/Unix/build.sh; ./BuildServer/Unix/tests.sh; cp -a ${CI_PROJECT_DIR}/build /artifacts/; cp -a ${CI_PROJECT_DIR}/temp /artifacts/
\ No newline at end of file
FROM ci_mdanse_bionic
SHELL ["/bin/bash", "-c"]
ARG CI_COMMIT_SHORT_SHA
ARG CI_COMMIT_REF_NAME
ENV CI_COMMIT_SHORT_SHA=${CI_COMMIT_SHORT_SHA}
ENV CI_COMMIT_REF_NAME=${CI_COMMIT_REF_NAME}
COPY ./ /app/
WORKDIR /app
CMD source ./BuildServer/Unix/Debian/definitions.sh; source ./BuildServer/Unix/setup_ci.sh; source ./BuildServer/Unix/bionic_dependencies_modification.sh; ./BuildServer/Unix/Debian/deploy.sh; cp -a *.deb /artifacts/
\ No newline at end of file
FROM ubuntu:bionic
ENV https_proxy http://proxy.ill.fr:8888
ENV http_proxy http://proxy.ill.fr:8888
RUN export DEBIAN_FRONTEND=noninteractive
RUN apt-get update
......@@ -25,6 +28,4 @@ RUN apt-get install -y --no-install-recommends python-nose
RUN apt-get install -y --no-install-recommends python-sphinx
RUN apt-get install -y --no-install-recommends pyro
RUN apt-get install -y --no-install-recommends lsb-release
RUN apt-get install -y --no-install-recommends lsb-release
\ No newline at end of file
FROM ci_mdanse_trusty
SHELL ["/bin/bash", "-c"]
ARG CI_COMMIT_SHORT_SHA
ARG CI_COMMIT_REF_NAME
ENV CI_COMMIT_SHORT_SHA=${CI_COMMIT_SHORT_SHA}
ENV CI_COMMIT_REF_NAME=${CI_COMMIT_REF_NAME}
COPY ./ /app/
WORKDIR /app
CMD source ./BuildServer/Unix/Debian/definitions.sh; source ./BuildServer/Unix/setup_ci.sh; ./BuildServer/Unix/build.sh; ./BuildServer/Unix/tests.sh; cp -a ${CI_PROJECT_DIR}/build /artifacts/; cp -a ${CI_PROJECT_DIR}/temp /artifacts/
\ No newline at end of file
FROM ci_mdanse_trusty
SHELL ["/bin/bash", "-c"]
ARG CI_COMMIT_SHORT_SHA
ARG CI_COMMIT_REF_NAME
ENV CI_COMMIT_SHORT_SHA=${CI_COMMIT_SHORT_SHA}
ENV CI_COMMIT_REF_NAME=${CI_COMMIT_REF_NAME}
COPY ./ /app/
WORKDIR /app
CMD source ./BuildServer/Unix/Debian/definitions.sh; source ./BuildServer/Unix/setup_ci.sh; ./BuildServer/Unix/Debian/deploy.sh; cp -a *.deb /artifacts/
\ No newline at end of file
FROM ubuntu:trusty
ENV https_proxy http://proxy.ill.fr:8888
ENV http_proxy http://proxy.ill.fr:8888
RUN export DEBIAN_FRONTEND=noninteractive
RUN apt-get update
RUN apt-get install -y tzdata
......@@ -23,5 +28,4 @@ RUN apt-get install -y --no-install-recommends python-nose
RUN apt-get install -y --no-install-recommends python-sphinx
RUN apt-get install -y --no-install-recommends pyro
RUN apt-get install -y --no-install-recommends lsb-release
RUN apt-get install -y --no-install-recommends lsb-release
\ No newline at end of file
FROM ci_mdanse_xenial
SHELL ["/bin/bash", "-c"]
ARG CI_COMMIT_SHORT_SHA
ARG CI_COMMIT_REF_NAME
ENV CI_COMMIT_SHORT_SHA=${CI_COMMIT_SHORT_SHA}
ENV CI_COMMIT_REF_NAME=${CI_COMMIT_REF_NAME}
COPY ./ /app/
WORKDIR /app
CMD source ./BuildServer/Unix/Debian/definitions.sh; source ./BuildServer/Unix/setup_ci.sh; ./BuildServer/Unix/build.sh; ./BuildServer/Unix/tests.sh; cp -a ${CI_PROJECT_DIR}/build /artifacts/; cp -a ${CI_PROJECT_DIR}/temp /artifacts/
\ No newline at end of file
FROM ci_mdanse_xenial
SHELL ["/bin/bash", "-c"]
ARG CI_COMMIT_SHORT_SHA
ARG CI_COMMIT_REF_NAME
ENV CI_COMMIT_SHORT_SHA=${CI_COMMIT_SHORT_SHA}
ENV CI_COMMIT_REF_NAME=${CI_COMMIT_REF_NAME}
COPY ./ /app/
WORKDIR /app
CMD source ./BuildServer/Unix/Debian/definitions.sh; source ./BuildServer/Unix/setup_ci.sh; ./BuildServer/Unix/Debian/deploy.sh; cp -a *.deb /artifacts/
\ No newline at end of file
FROM ubuntu:xenial
ENV https_proxy http://proxy.ill.fr:8888
ENV http_proxy http://proxy.ill.fr:8888
RUN export DEBIAN_FRONTEND=noninteractive
RUN apt-get update
RUN apt-get install -y tzdata
......@@ -23,5 +28,4 @@ RUN apt-get install -y --no-install-recommends python-nose
RUN apt-get install -y --no-install-recommends python-sphinx
RUN apt-get install -y --no-install-recommends pyro
RUN apt-get install -y --no-install-recommends lsb-release
RUN apt-get install -y --no-install-recommends lsb-release
\ No newline at end of file
# Return the docker containers that are exited
exited_containers=`docker ps -q -f "status=exited"`
# If some have been found, remove them
if [ -n "$exited_containers" ]
then
docker rm -f ${exited_containers}
fi
# Return the docker images corresponding to MDANSE
images=`docker images -a --format "{{.Repository}}:{{.Tag}}" | grep _mdanse_`
# If some have been found, remove them
if [ -n "$images" ]
then
docker rmi -f ${images}
fi
# Return the docker images that are in dangling state
images=`docker images -q -f "dangling=true"`
# If some dangling images have been found, remove them
if [ -n "$images" ]
then
docker rmi -f ${images}
fi
SET app_name create-dmg
VERSION create-dmg.cur create-dmg heads/master
NEWDIR build.dir temp %-build -
NEWFILE create-dmg.zip featured %.zip %
COPYTO [build.dir]
INTO create-dmg [create-dmg.cur]/create-dmg
INTO sample [create-dmg.cur]/sample
INTO support [create-dmg.cur]/support
SUBSTVARS [build.dir<alter>]/create-dmg [[]]
ZIP [create-dmg.zip]
INTO [build-files-prefix] [build.dir]
PUT megabox-builds create-dmg.zip
PUT megabox-builds build.log
PUT s3-builds create-dmg.zip
PUT s3-builds build.log
# coding=utf-8
import os
import sys
if sys.platform.startswith('darwin'):
from setuptools import setup
version = os.environ['VERSION_NAME']
project_dir = os.environ['CI_PROJECT_DIR']
APP = [os.path.join(project_dir,'Scripts','mdanse_gui')]
PLIST = {
u'CFBundleName': u'MDANSE',
u'CFBundleShortVersionString': version,
u'CFBundleVersion': version,
u'CFBundleIdentifier': u'eu.ill.MDANSE-'+version,
u'LSApplicationCategoryType': u'public.app-category.science'
}
OPTIONS = {
'argv_emulation': False,# has to be False otherwise triggers problems with wxPython which lose some events that are captured by OS
'iconfile': os.path.join(project_dir,'Src','GUI','Icons','mdanse.icns'),
'excludes': 'PyQt4',
'matplotlib_backends': '-',
'optimize': '1',
'plist': PLIST,
'bdist_base': os.environ['CI_TEMP_BUILD_DIR'],
'dist_dir': os.path.join(os.environ['CI_TEMP_DIR'],'dist'),
'graph': False,
'xref': False,
'packages' : ["MDANSE","MMTK","Scientific","matplotlib"]
}
setup(
name='MDANSE',
app=APP,
options={'py2app': OPTIONS},
setup_requires=['py2app']
)
else:
print 'No build_app implementation for your system.'
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment