Better selection unselection but not perfect

src/main/java/fr/ill/ics/n3d/Nomad3DEditor.java

@@ -3,6 +3,7 @@ package fr.ill.ics.n3d;
 import java.io.File;
 import java.util.Optional;
 import java.util.logging.FileHandler;
+import java.util.logging.Level;
 import java.util.logging.Logger;
 import java.util.logging.SimpleFormatter;
 
@@ -143,6 +144,7 @@ public class Nomad3DEditor extends Application {
 		
 		try {
 			Logger logger = Logger.getLogger("nomad-3d");
+			logger.setLevel(Level.ALL);
 			String logPath = System.getProperty("user.dir") + File.separator + "nomad-3d-editor.log";
 			FileHandler handler = new FileHandler(logPath);
 			handler.setFormatter(new SimpleFormatter());

src/main/java/fr/ill/ics/n3d/gui/EditorMenuBar.java

@@ -730,7 +730,7 @@ public class EditorMenuBar extends MenuBar {
 				
 				Nomad3DEditor.getInstance().getModel().clearSelection();
 				updateScene();
-				Nomad3DEditor.getInstance().getModel().addToSelection(selectedComponent);
+				Nomad3DEditor.getInstance().getModel().addToSelectionWithTreeUpdate(selectedComponent);
 				valueThread.interrupt();
 				addStage.close();
 			});
@@ -744,7 +744,7 @@ public class EditorMenuBar extends MenuBar {
 				selectedComponent.setAxis(initialAxis);
 				Nomad3DEditor.getInstance().getModel().clearSelection();
 				updateScene();
-				Nomad3DEditor.getInstance().getModel().addToSelection(selectedComponent);
+				Nomad3DEditor.getInstance().getModel().addToSelectionWithTreeUpdate(selectedComponent);
 				valueThread.interrupt();
 				addStage.close();
 			});