Revert "Rolling back modifications that broke functional tests"

This reverts commit 68bcdf58.
7 jobs for bugfix-fix_dcsf_q_vectors in 11 minutes and 46 seconds (queued for 4 seconds)
Status Job ID Name Coverage
  Docker Login
passed #15828
ubuntu sci docker
docker_login

00:00:14

 
  Ci
failed #15832
osx-10.13 sci
ci:osx

00:08:21

failed #15831
ubuntu sci docker
ci:ubuntu_bionic

00:00:19

failed #15829
ubuntu sci docker
ci:ubuntu_trusty

00:06:47

failed #15830
ubuntu sci docker
ci:ubuntu_xenial

00:05:38

failed #15833
windows-10 sci
ci:windows

00:03:45

 
  Docker Logout
passed #15834
ubuntu sci docker
docker_logout

00:00:13

 
Name Stage Failure
failed
ci:osx Ci
Comparing multiprocessor output with reference output
Launching job in monoprocessor mode
Monoprocessor execution completed
Launching job in multiprocessor mode
Multiprocessor execution completed
Comparing monoprocessor output with reference output
Comparing multiprocessor output with reference output
One or several functional tests failed
ERROR: Job failed: exit status 1
failed
ci:ubuntu_trusty Ci
Monoprocessor execution completed
Launching job in multiprocessor mode
Multiprocessor execution completed
Comparing monoprocessor output with reference output
Comparing multiprocessor output with reference output
One or several functional tests failed
Removing intermediate container 9d11578dbe68
The command '/bin/bash -c source ./BuildServer/Unix/Debian/definitions.sh; source ./BuildServer/Unix/setup_ci.sh ; ./BuildServer/Unix/tests.sh' returned a non-zero code: 1
ERROR: Job failed: exit code 1
failed
ci:ubuntu_xenial Ci
Monoprocessor execution completed
Launching job in multiprocessor mode
Multiprocessor execution completed
Comparing monoprocessor output with reference output
Comparing multiprocessor output with reference output
One or several functional tests failed
Removing intermediate container 4c3b9285d6ea
The command '/bin/bash -c source ./BuildServer/Unix/Debian/definitions.sh; source ./BuildServer/Unix/setup_ci.sh ; ./BuildServer/Unix/tests.sh' returned a non-zero code: 1
ERROR: Job failed: exit code 1
failed
ci:windows Ci
    self.assertTrue(compare("../../../Data/Jobs_reference_data/rmsd_reference.nc", reference_data_path + "_mono" + ".nc"))
AssertionError: False is not true

----------------------------------------------------------------------
Ran 51 tests in 127.286s

FAILED (failures=2)
"Failed when running functional tests"
ERROR: Job failed: exit status 1
failed
ci:ubuntu_bionic Ci
 ---> abee5b71c8ab
Step 4/8 : RUN GIT_SSL_NO_VERIFY=true git clone https://code.ill.fr/scientific-software/mdanse.git
---> Running in 027ef7d0644e
Cloning into 'mdanse'...
error: RPC failed; HTTP 500 curl 22 The requested URL returned error: 500 Internal Server Error
fatal: The remote end hung up unexpectedly
Removing intermediate container 027ef7d0644e
The command '/bin/bash -c GIT_SSL_NO_VERIFY=true git clone https://code.ill.fr/scientific-software/mdanse.git' returned a non-zero code: 128
ERROR: Job failed: exit code 128