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Commit cee32cd5 authored by Remi Perenon's avatar Remi Perenon
Browse files

Dealing with unordered LAMMPS files

parent 4755ad1f
Pipeline #8012 passed with stages
in 35 minutes and 13 seconds
......@@ -228,7 +228,7 @@ class LAMMPSConverter(Converter):
for i,_ in enumerate(range(self._itemsPosition["ATOMS"][0], self._itemsPosition["ATOMS"][1])):
temp = self._lammps.readline().split()
idx = self._nameToIndex[self._rankToName[i]]
idx = self._nameToIndex[self._rankToName[int(temp[0])-1]]
conf.array[idx,:] = numpy.array([temp[self._x],temp[self._y],temp[self._z]],dtype=numpy.float64)
if self._fractionalCoordinates:
......@@ -336,7 +336,7 @@ class LAMMPSConverter(Converter):
idx = int(temp[self._id])-1
ty = int(temp[self._type])
name = "%s%d" % (self._lammpsConfig["elements"][ty],idx)
self._rankToName[i] = name
self._rankToName[int(temp[0])-1] = name
g.add_node(idx, element=self._lammpsConfig["elements"][ty], atomName=name)
if self._lammpsConfig["n_bonds"] is not None:
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