Commit c67e4126 authored by eric pellegrini's avatar eric pellegrini
Browse files

The job plugin can now be plugged into the viewer or on the data plugin

The DataInfoPlugin is now OK
Bug fix with pubsub.sendMessage wrong keyword
Improved the AtomListSelectionDialog
Removed unuseful pubsub calls from the molecular viewer
parent 9e9c7fe1
......@@ -67,7 +67,7 @@ class AngularCorrelation(IJob):
category = ('Dynamics',)
ancestor = "mmtk_trajectory"
ancestor = ["mmtk_trajectory"]
settings = collections.OrderedDict()
settings['trajectory'] = ('mmtk_trajectory',{})
......
......@@ -56,7 +56,7 @@ class AreaPerMolecule(IJob):
category = ('Structure',)
ancestor = "mmtk_trajectory"
ancestor = ["mmtk_trajectory"]
settings = collections.OrderedDict()
settings['trajectory'] = ('mmtk_trajectory',{'default':os.path.join('..','..','..','Data','Trajectories','MMTK','dmpc_in_periodic_universe.nc')})
......
......@@ -53,7 +53,7 @@ class BoxCenteredTrajectory(IJob):
category = ('Trajectory',)
ancestor = "mmtk_trajectory"
ancestor = ["mmtk_trajectory"]
settings = collections.OrderedDict()
settings['trajectory'] = ('mmtk_trajectory',{})
......
......@@ -51,7 +51,7 @@ class CenterOfMassesTrajectory(IJob):
category = ('Trajectory',)
ancestor = "mmtk_trajectory"
ancestor = ["mmtk_trajectory"]
settings = collections.OrderedDict()
settings['trajectory'] = ('mmtk_trajectory',{})
......
......@@ -43,4 +43,4 @@ class CHARMMConverter(DCDConverter):
category = ('Converters',)
ancestor = None
\ No newline at end of file
ancestor = []
\ No newline at end of file
......@@ -143,7 +143,7 @@ class CASTEPConverter(Converter):
category = ('Converters',)
ancestor = None
ancestor = []
settings = collections.OrderedDict()
settings['castep_file'] = ('input_file', {'default':os.path.join('..','..','..','Data','Trajectories','CASTEP','PBAnew.md')})
......
......@@ -291,7 +291,7 @@ class DL_POLYConverter(Converter):
category = ('Converters',)
ancestor = None
ancestor = []
settings = collections.OrderedDict()
settings['field_file'] = ('input_file',{'wildcard':"FIELD files|FIELD*|All files|*",
......
......@@ -233,7 +233,7 @@ class DiscoverConverter(Converter):
category = ('Converters','Materials Studio')
ancestor = None
ancestor = []
settings = collections.OrderedDict()
settings['xtd_file'] = ('input_file',{'default':os.path.join('..','..','..','Data','Trajectories','Discover','sushi.xtd')})
......
......@@ -283,7 +283,7 @@ class ForciteConverter(Converter):
category = ('Converters','Materials Studio')
ancestor = None
ancestor = []
settings = collections.OrderedDict()
settings['xtd_file'] = ('input_file',{'default':os.path.join('..','..','..','Data','Trajectories','Forcite','nylon66_rho100_500K_v300K.xtd')})
......
......@@ -167,7 +167,7 @@ class GenericConverter(Converter):
category = ('Converters',)
ancestor = None
ancestor = []
settings = collections.OrderedDict()
settings['gt_file'] = ('input_file',{'wildcard':"Generic trajectory files|*.gtf|All files|*",
......
......@@ -126,7 +126,7 @@ class LAMMPSConverter(Converter):
category = ('Converters',)
ancestor = None
ancestor = []
settings = collections.OrderedDict()
settings['config_file'] = ('input_file', {'label':"LAMMPS configuration file",
......
......@@ -43,4 +43,4 @@ class NAMDConverter(DCDConverter):
category = ('Converters',)
ancestor = None
\ No newline at end of file
ancestor = []
\ No newline at end of file
......@@ -49,7 +49,7 @@ class PDBConverter(Converter):
category = ('Converters',)
ancestor = None
ancestor = []
settings = collections.OrderedDict()
settings['pdb_file'] = ('input_file',{'default':os.path.join('..','..','..','Data','Trajectories','PDB','2f58_nma.pdb')})
......
......@@ -126,7 +126,7 @@ class VASPConverter(Converter):
category = ('Converters',)
ancestor = None
ancestor = []
settings = collections.OrderedDict()
settings['xdatcar_file'] = ('input_file',{'default':os.path.join('..','..','..','Data','Trajectories','VASP','XDATCAR_version5')})
......
......@@ -43,4 +43,4 @@ class XPLORConverter(DCDConverter):
category = ('Converters',)
ancestor = None
\ No newline at end of file
ancestor = []
\ No newline at end of file
......@@ -48,7 +48,7 @@ class CoordinationNumber(DistanceHistogram):
category = ('Structure',)
ancestor = "mmtk_trajectory"
ancestor = ["mmtk_trajectory"]
settings = collections.OrderedDict()
settings['trajectory'] = ('mmtk_trajectory',{})
......
......@@ -49,7 +49,7 @@ class CroppedTrajectory(IJob):
category = ('Trajectory',)
ancestor = "mmtk_trajectory"
ancestor = ["mmtk_trajectory"]
settings = collections.OrderedDict()
settings['trajectory'] = ('mmtk_trajectory',{})
......
......@@ -56,7 +56,7 @@ class CurrentCorrelationFunction(IJob):
category = ('Scattering',)
ancestor = "mmtk_trajectory"
ancestor = ["mmtk_trajectory"]
settings = collections.OrderedDict()
settings['trajectory'] = ('mmtk_trajectory',{})
......
......@@ -47,7 +47,7 @@ class Density(IJob):
category = ('Thermodynamics',)
ancestor = "mmtk_trajectory"
ancestor = ["mmtk_trajectory"]
settings = collections.OrderedDict()
settings['trajectory'] = ('mmtk_trajectory',{})
......
......@@ -51,7 +51,7 @@ class DensityOfStates(IJob):
category = ('Dynamics',)
ancestor = "mmtk_trajectory"
ancestor = ["mmtk_trajectory"]
settings = collections.OrderedDict()
settings['trajectory'] = ('mmtk_trajectory',{})
......
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