Add 'cameo-api-python/' from commit 'd8cfe178'

git-subtree-dir: cameo-api-python
git-subtree-mainline: 93ab541b
git-subtree-split: d8cfe178

cameo-api-python/.clang-format

+BasedOnStyle: LLVM
+IndentWidth: 8
+#UseTab: UT_AlignWithSpaces # available in release later than 9
+UseTab: ForContinuationAndIndentation
+BreakBeforeBraces: Custom
+BraceWrapping:
+	AfterNamespace: false
+AllowShortIfStatementsOnASingleLine: false
+IndentCaseLabels: false
+ColumnLimit: 110
+
+AlignConsecutiveAssignments: true
+AlignConsecutiveDeclarations: false
+AlignTrailingComments: true
+AccessModifierOffset: -8 # It has to be equal to the tab size
+NamespaceIndentation: None
+PointerAlignment: Left
+AlwaysBreakAfterReturnType: None
+
+SortIncludes: false
+
+

cameo-api-python/.gitignore

+build/
+/.project
+/.pydevproject

cameo-api-python/.gitlab-ci.yml

+image: gcc
+variables:
+  GIT_SUBMODULE_STRATEGY: normal
+  
+stages:
+  - build
+  - doc
+  - test
+
+before_script:
+  - git status
+  - mkdir -p build/
+  - cd build/
+
+compile_api:
+  stage: build
+  script:
+    - cmake ..
+    - cmake --build .
+    - cmake -DCAMEOPYTHON_TESTS=ON ..
+    - cmake --build .
+
+test:
+  stage: test
+  script:
+   - cd ..
+   - ./test.sh
+   
+pages:
+  stage: doc
+  script:
+    - cmake ..
+    - cmake --build . --target doc
+    - mv doc/html/ ../public/
+  artifacts:
+    paths:
+      - public
+  only:
+    - master
\ No newline at end of file

cameo-api-python/.gitmodules

+[submodule "pybind11"]
+	path = pybind11
+	url = git@github.com:pybind/pybind11.git
+[submodule "doctest"]
+	path = doctest
+	url = https://github.com/onqtam/doctest.git

cameo-api-python/CMakeLists.txt

+cmake_minimum_required(VERSION 3.12.0)
+
+# Project name and version
+project(cameo-api-python
+  VERSION 1.0.0
+  LANGUAGES CXX
+  HOMEPAGE_URL "https://code.ill.fr/cameo/cameo"
+  )
+
+#--------------- Helpers
+include(GNUInstallDirs)
+include(CMakePackageConfigHelpers)
+include(FetchContent)
+
+
+# in order to find FindZeroMQ.cmake
+list(APPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_SOURCE_DIR}/../cameo-api-cpp/)
+
+#------------------------------------------------------------
+# Dependencies
+#------------------------------------------------------------
+#list(APPEND CMAKE_PREFIX_PATH ${CMAKE_CURRENT_SOURCE_DIR}/../cameo-api-cpp/build/)
+#message(STATUS ${CMAKE_MODULE_PATH})
+find_package(cameo-api-cpp-static 1.1.0 REQUIRED) # provided by the C++ API
+find_package(pybind11 2.4.3 QUIET)
+if(NOT pybind11_FOUND)
+  message(WARNING "Using pybind11 from GIT repository")
+  FetchContent_Declare(pybind11
+	GIT_REPOSITORY https://github.com/pybind/pybind11.git
+	GIT_TAG v2.4.3
+	GIT_SHALLOW True
+	)
+  FetchContent_GetProperties(pybind11)
+  if(NOT pybind11_POPULATED)
+	FetchContent_Populate(pybind11)
+	add_subdirectory(${pybind11_SOURCE_DIR} ${pybind11_BINARY_DIR})
+	mark_as_advanced(PYBIND11_TEST)
+	mark_as_advanced(PYBIND11_INSTALL)
+  endif()
+  #else()
+#  find_package(pybind11 2.4.3 REQUIRED)
+endif()
+
+pybind11_add_module(cameopy src/Application.cpp)
+
+#file(GENERATE OUTPUT /tmp/message.log CONTENT $<TARGET_PROPERTY:cameo,INTERFACE_INCLUDE_DIRECTORIES>)
+target_link_libraries(cameopy PRIVATE Cameo::cameo-api-cpp-static)
+#target_compile_features(cameopy PUBLIC cxx_std_17)
+#target_include_directories(cameopy
+#  PRIVATE $<TARGET_PROPERTY:Cameo::cameo-api-cpp,INTERFACE_INCLUDE_DIRECTORIES>
+#  )
+
+#target_include_directories(${MODULE_NAME} ${cameo_INCLUDE_DIR})
+set_target_properties(cameopy PROPERTIES
+  SOVERSION ${PROJECT_VERSION_MAJOR}
+  VERSION ${PROJECT_VERSION}
+  )
+
+
+
+#####------------------------------------------- copied from CMakeLists.txt of openPMD-api
+if(WIN32)
+  set(CMAKE_INSTALL_PYTHONDIR_DEFAULT
+    "${CMAKE_INSTALL_LIBDIR}/site-packages"
+    )
+else()
+  set(CMAKE_INSTALL_PYTHONDIR_DEFAULT
+    "${CMAKE_INSTALL_LIBDIR}/python${PYTHON_VERSION_MAJOR}.${PYTHON_VERSION_MINOR}/site-packages"
+    )
+endif()
+set(CMAKE_INSTALL_PYTHONDIR "${CMAKE_INSTALL_PYTHONDIR_DEFAULT}"
+  CACHE STRING "Location for installed python package"
+  )
+#set(CMAKE_PYTHON_OUTPUT_DIRECTORY
+#  "${openPMD_BINARY_DIR}/${CMAKE_INSTALL_PYTHONDIR}"
+#  CACHE PATH "Build directory for python modules"
+#  )
+# set_target_properties(raytracing.py PROPERTIES
+# #  ARCHIVE_OUTPUT_NAME openpmd_api_cxx
+# #  LIBRARY_OUTPUT_NAME openpmd_api_cxx
+#   ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_PYTHON_OUTPUT_DIRECTORY}/raytracing_api
+#   LIBRARY_OUTPUT_DIRECTORY ${CMAKE_PYTHON_OUTPUT_DIRECTORY}/raytracing_api
+#   RUNTIME_OUTPUT_DIRECTORY ${CMAKE_PYTHON_OUTPUT_DIRECTORY}/raytracing_api
+#   PDB_OUTPUT_DIRECTORY ${CMAKE_PYTHON_OUTPUT_DIRECTORY}/raytracing_api_api
+#   COMPILE_PDB_OUTPUT_DIRECTORY ${CMAKE_PYTHON_OUTPUT_DIRECTORY}/raytracing_api
+#   )
+# add_custom_command(TARGET raytracing.py POST_BUILD
+#   COMMAND ${CMAKE_COMMAND} -E copy_directory
+#   ${openPMD_SOURCE_DIR}/python/src/raytracing_api
+#   ${CMAKE_PYTHON_OUTPUT_DIRECTORY}/raytracing_api
+#   )
+
+##### End of ------------------------------------ copied from CMakeLists.txt of openPMD-api
+
+
+
+#---------------
+# Library version
+write_basic_package_version_file(${PROJECT_NAME}ConfigVersion.cmake
+  COMPATIBILITY SameMajorVersion
+  VERSION ${PROJECT_VERSION}
+  )
+install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}ConfigVersion.cmake
+  DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME})
+
+#------------------------------------------------------------
+# Install
+#------------------------------------------------------------
+install(
+  FILES   ${CMAKE_CURRENT_SOURCE_DIR}/src/__init__.py
+  DESTINATION ${CMAKE_INSTALL_PYTHONDIR}/${PROJECT_NAME}
+  )
+install(TARGETS cameopy
+  EXPORT cameopyexport
+  LIBRARY DESTINATION ${CMAKE_INSTALL_PYTHONDIR}/${PROJECT_NAME}
+  )
+
+
+#------------------------------------------------------------
+# CPack
+#------------------------------------------------------------
+include(${CMAKE_CURRENT_SOURCE_DIR}/packaging/CPackConfig.cmake)
+include(CPack)

cameo-api-python/LICENSE

+                      EUROPEAN UNION PUBLIC LICENCE v. 1.2
+                      EUPL © the European Union 2007, 2016
+
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+Copyleft clause: If the Licensee distributes or communicates copies of the
+Original Works or Derivative Works, this Distribution or Communication will be
+done under the terms of this Licence or of a later version of this Licence
+unless the Original Work is expressly distributed only under this version of the
+Licence — for example by communicating ‘EUPL v. 1.2 only’. The Licensee
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+the Work or Derivative Work that alter or restrict the terms of the Licence.
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+Compatibility clause: If the Licensee Distributes or Communicates Derivative
+Works or copies thereof based upon both the Work and another work licensed under
+a Compatible Licence, this Distribution or Communication can be done under the
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+
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+  Licensor, and any Licensee, will be subject to the jurisdiction of the Court
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+15. Applicable Law
+
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+  residence or registered office inside a European Union Member State.
+
+Appendix
+
+‘Compatible Licences’ according to Article 5 EUPL are:
+
+- GNU General Public License (GPL) v. 2, v. 3
+- GNU Affero General Public License (AGPL) v. 3
+- Open Software License (OSL) v. 2.1, v. 3.0
+- Eclipse Public License (EPL) v. 1.0
+- CeCILL v. 2.0, v. 2.1
+- Mozilla Public Licence (MPL) v. 2
+- GNU Lesser General Public Licence (LGPL) v. 2.1, v. 3
+- Creative Commons Attribution-ShareAlike v. 3.0 Unported (CC BY-SA 3.0) for
+  works other than software
+- European Union Public Licence (EUPL) v. 1.1, v. 1.2
+- Québec Free and Open-Source Licence — Reciprocity (LiLiQ-R) or Strong
+  Reciprocity (LiLiQ-R+).
+
+The European Commission may update this Appendix to later versions of the above
+licences without producing a new version of the EUPL, as long as they provide
+the rights granted in Article 2 of this Licence and protect the covered Source
+Code from exclusive appropriation.
+
+All other changes or additions to this Appendix require the production of a new
+EUPL version.

cameo-api-python/README.md

+# cameo-api-python
+
+This library provides the Python API for Cameo.
+
+ 
+## Compilation dependencies
+- cmake 3.12.0
+- [pybind11](https://github.com/pybind/pybind11)
+The API is obtained using pybind11 and the C++ Cameo API. If the required version is not available on the system, it is automatically downloaded from source and compiled in place.
+- [doctest](https://github.com/onqtam/doctest)
+Testing is performed using the doctest framework.
+- cameo-api-cpp-static: the static library need to be compiled first. See [here](../cameo-api-cpp/REDME.md) for compilation instructions of cameo-cpp-api.
+
+For convenience, the packages for some major distributions are listed in the following:
+
+ - CENTOS 8: `yum install -y cmake pybind11-devel`
+ - Ubuntu bionic: `sudo apt install libzmq3-dev`
+ *N.B.* `pybind11-dev` has version 2.0.1 while 2.4.3 is needed -> most recent version automatically downloaded and compiled from source
+
+## How to compile and install
+
+```
+cmake -S . -B <build directory> -DCMAKE_PREFIX_PATH="<cpp api build directory> -D<OPTION>"
+cmake --build <build directory>
+```
+Possible options are:
+ - CMAKE_INSTALL_PREFIX=<your_chosen_install_basepath>: to install in a non-standard directory
+
+Debian packages can also be created by:
+```
+cpack --config <build directory>/CPackConfig.cmake -B <build directory>/packaging 
+```
+and be found in `<build directory>/packaging`
+
+
+Don't forget to set your LD_LIBRARY_PATH to `/usr/local/lib64/`
+
+Developers can follow the instructions [here](doc/DEVEL.md)

cameo-api-python/doc/DEVEL.md

+## Dependencies for testing:
+Ubuntu bionic: `sudo apt install doctest-dev`
+
+
+## How to compile and install
+```
+cmake -S . -B <build_directory> -DCMAKE_PREFIX_PATH=<cpp_api_build_directory>
+cmake --build <build_directory>
+```
+
+in order to install in a non-standard directory add the `-DCMAKE_INSTALL_PREFIX=<your_base_path>` to the first cmake invocation.
+
+
+If you are using a non-standard path, the following environmental variables should then be set.
+```
+#!/bin/bash
+export CMAKE_INSTALL_PREFIX=MY_INSTALL_PATH
+export PYTHONPATH=${PYTHONPATH}:${CMAKE_INSTALL_PREFIX}/lib64/python3.6/site-packages/
+export LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ${CMAKE_INSTALL_PREFIX}/lib64
+```
+Example for the fish shell:
+```
+#!/bin/fish
+set -lx CMAKE_INSTALL_PREFIX /tmp/devel/
+set -lx PYTHONPATH $PYTHONPATH $CMAKE_INSTALL_PREFIX/lib64/python3.6/site-packages/
+set -lx LD_LIBRARY_PATH $CMAKE_INSTALL_PREFIX/lib64/
+```
+
+# Testing
+For testing you need CAMEO to be installed in order to run the cameo_server
+
+In order to run the tests, just type
+```./test.sh```
+from the source directory root.
+
+### CENTOS
+The java.library.path is the LD_LIBRARY_PATH + [/usr/java/packages/lib, /usr/lib64, /lib64, /lib, /usr/lib]
+Point the LD_LIBRARY_PATH to the place where the libjzmq.so is stored
+
+```
+fish
+set -x LD_LIBRARY_PATH /usr/share/java/ /usr/local/lib/
+/usr/lib/jvm/java-14-openjdk-14.0.1.7-2.rolling.el8.x86_64/bin/java -jar "/usr/local/share/java/cameo-server.jar" test/cameo_config.xml
+
+# list the test cases:
+cmo -e tcp://localhost:2000 exec testA --list-test-cases --verbose
+
+cmo -e tcp://localhost:2000 exec testA -s --test-case=self
+cmo -e tcp://localhost:2000 exec testA -s --test-case=instance
+cmo -e tcp://localhost:2000 exec testA -s --test-case=requester --subcase-exclude=python
+
+ctest --output-on-failure
+```
+
+# Testing Ubuntu
+```
+bash
+export LD_LIBRARY_PATH=/usr/share/java/:/usr/lib/x86_64-linux-gnu/jni
+cameo-server test/cameo_config.xml
+```
+
+
+
+cmake .. -DopenPMD_USE_PYTHON=OFF -DopenPMD_INSTALL=OFF -DopenPMD_USE_INTERNAL_CATCH=ON -DBUILD_TESTING=OFF -DBUILD_EXAMPLES=OFF -DBUILD_CLI_TOOLS=ON
+
+
+
+
+
+ cmake .. -DCMAKE_INSTALL_PREFIX=/tmp/devel3 -Dcameo_DIR=/tmp/devel2/lib64/cmake/

cameo-api-python/doc/TODO

+
+
+## TODO
+ - [X] Add licence file
+ - [X] Add copyright comment in all the files
+ - [ ] Add reference to thirdparty libraries in the README
+   - [X] doctest
+   - [X] pybind11 
+ - [ ] Test installation
+ - [ ] Add the binding for the ostream << operation
+ - [ ] Implement WaitFor for Instance class
+

cameo-api-python/packaging/CPackConfig.cmake

+set(CPACK_WARN_ON_ABSOLUTE_INSTALL_DESTINATION ON)
+set(CPACK_PACKAGE_CHECKSUM MD5)
+
+set(CPACK_PACKAGE_CONTACT "Yannick Le Goc <legoc@ill.fr>")
+set(CPACK_PACKAGE_VENDOR "ILL")
+set(CPACK_PACKAGE_DESCRIPTION_SUMMARY "Cameo Python API")
+
+set(CPACK_GENERATOR "DEB")
+# #set(CPACK_PACKAGE_DESCRIPTION_FILE "/home/andy/vtk/CMake/Copyright.txt")
+set(CPACK_PACKAGE_DESCRIPTION "Long description")
+set(CPACK_RESOURCE_FILE_README ${CMAKE_CURRENT_SOURCE_DIR}/README.md)
+
+
+set(CPACK_DEBIAN_FILE_NAME DEB-DEFAULT)
+set(CPACK_RPM_FILE_NAME RPM-DEFAULT)
+
+set(CPACK_RPM_BUILDREQUIRES "cmake >= ${CMAKE_MINIMUM_REQUIRED_VERSION}")
+
+set(CPACK_DEBIAN_PACKAGE_SECTION python)
+
+# set(CPACK_RPM_PACKAGE_RELOCATABLE ON)
+# set(CPACK_RPM_PACKAGE_LICENSE "EUPL v1.1")
+
+set(CPACK_COMPONENTS_IGNORE_GROUPS ON)
+set(CPACK_DEB_COMPONENT_INSTALL TRUE)
+
+set(CPACK_RPM_COMPONENT_INSTALL TRUE)
+set(CPACK_DEBIAN_ENABLE_COMPONENT_DEPENDS ON)
+
+set(CPACK_DEBIAN_PACKAGE_DEPENDS "python3:any, cameo-server (>=1.0.2)")
+set(CPACK_DEBIAN_PACKAGE_ARCHITECTURE all)
+